PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029464m
Common NameCICLE_v10029464mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 160aa    MW: 17236.2 Da    PI: 9.8038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029464mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00133254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F++   L  H  +H
  Ciclev10029464m 32 FACKTCNKEFPSFQALGGHRASH 54
                     78**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-930107No hitNo description
PfamPF139121.1E-123156IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8683259IPR007087Zinc finger, C2H2
SMARTSM003550.233254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PfamPF139125.3E-1084109IPR007087Zinc finger, C2H2
PROSITE profilePS501579.16285112IPR007087Zinc finger, C2H2
SMARTSM003550.585107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKRDREMAAI DTANCLMLLS KVGETDQGKR VFACKTCNKE FPSFQALGGH RASHKKPKLM  60
TMASSGEDFD QAQMPPASPK KPKTHECSIC GLEFAIGQAL GGHMRRHRAA AAMGAAADGL  120
VTRPLLQLPV LKKSNSCKRA LCLDLNLMPT GDDLKLWVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.50890.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2588930.0KF258893.1 Citrus trifoliata Cys2/His2-type zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488262.11e-115PREDICTED: zinc finger protein ZAT12
RefseqXP_006424755.11e-115hypothetical protein CICLE_v10029464mg
SwissprotQ424102e-40ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLV4SGM11e-115V4SGM1_9R
STRINGVIT_13s0019g00480.t012e-51(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-34C2H2 family protein